Can you send the recon-all.log file that contains the error?
On 1/24/2024 4:01 AM, Kapteijns, Kirsten wrote:
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Dear all,
I have run recon-all successfully on multiple subjects on multiple timepoints. If I open the mri folder, it shows the correct talairach files and no issues arose during processing.
However, when I then run the longitudinal pipeline (first base, which also shows correct files) on the subjects (recon-all -long SUBJXXtp1 SUBJXXbase -all) the talairach shows an failure detection and the subsequent file is talairach.invalid.mgz.
The actual segmentation etc. seems fine when inspecting, but when I then want to run segmentBS.sh on these processed folders, it gives an error.
I have run this a few month back without issue, and had just a few subjects left, but now all of them show this same error. Any idea how this could be caused?
Kind regards,
Kirsten
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