Hi Dilip.
You have to place your files where the subject-directory points. If you dont change the directory yourself, this is under freesurfer/subjects.
For more info about recon all, see https://surfer.nmr.mgh.harvard.edu/fswiki/recon-allhttps://surfer.nmr.mgh.ha...
Nina. ________________________________ Fra: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] på vegne af Dilip Puri [dilippuripuri@gmail.com] Sendt: 10. april 2017 07:46 Til: Freesurfer support list Emne: Re: [Freesurfer] segmentation help
Hi,
To-do "recon-all" where should I keep all the files. I mean in which directory. What are the command lines?
Hope for response.
Thanks Dilip
On Sun, Apr 9, 2017 at 7:18 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edumailto:fischl@nmr.mgh.harvard.edu> wrote: Hi Dilip
you need to run your image through recon-all.
cheers Bruce
On Sun, 9 Apr 2017, Dilip Puri wrote:
Hi all,
I've 200 analyze7.5 format images(OASIS Dataset) and I want to segment HippoCampus.
My input file xyz.img and output file will be like xyz_seg.img which contains only hippocampus image it like Grond Truth image for my original input image.
Here is sample files including original and segmented mask link.
Even I am very new to FREESURFER so I don't know the procedure to reconstruct the images.
Kindly help me.
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