What version are you running? Can you send the recon-all.log file?
On 7/16/2020 3:40 PM, Bahrani, Ahmed A. wrote:
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Hello Freesurfer experts,
I have a question related to the singularity container to run a bash script that contains a freesurfer's commend "nu_correct".
The singularity container only runs as a root user login and gives error as shown below with a general user login.
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---Error message--- evaluate_field: posixio.c:210: px_pgin: Assertion `*posp == ((off_t)(-1)) || *posp == lseek(nciop->fd, 0, 1)' failed. nu_evaluate: crashed while running evaluate_field (termination status=134) nu_correct: crashed while running nu_evaluate (termination status=65280)
---Error message--- ncvarput: ncid 4: No space left on device mivarput1: MINC package entry point nu_evaluate: crashed while running minccalc (termination status=768) nu_correct: crashed while running nu_evaluate (termination status=768)
Would you advise, please?
Thanks, Ahmed
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