Vina,
See this tutorial page:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData
namely, you use this command:
tkmedit <subj> brainmask.mgz lh.white \ -aux T1.mgz -aux-surface rh.white \ -segmentation aseg.mgz $FREESURFER_HOME/FreeSurferColorLUT.txt
which loads the surfaces creates by recon-all on top of the skull-stripped volume (brainmask.mgz). You would step through the slices to confirm that the pial and white surfaces are correct.
Nick
On Tue, 2008-08-19 at 13:07 -0500, Vina Goghari wrote:
Hello, I used recon-all on my subjects as I didn't expect majority of subjects to have a problem. However, what are the core steps (output images) I should check through for every subject?
Thanks, Vina _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer