Re: [Freesurfer] Using Buckner Cerebellar Parcellation

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Dear Thomas,

yes I am trying to warp the Buckner Parcellation to anatomical of all my subjects Please find below the command that I used:

mri_vol2vol --mov ../Buckner2011_7Networks_MNI152_FreeSurferConformed1mm_LooseMask.nii.gz \

--s 114823 \

--targ 114823/mri/brainmask.mgz \

--o Buckner2011_atlas_freesurfer_internal_space.nii.gz \

--interp nearest

Unfortunately the output is much bigger than the anatomical as I showed you in my previous email

Would you have any suggestions?

Thanks

Il giorno sab 8 feb 2020 alle ore 21:43 Thomas Yeo ythomas@csail.mit.edu ha scritto:

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Hi Davide,

Can you elaborate more? You are trying to warp the Buckner parcellation from MNI parcellation to where?

What's the exact command that you used?

--Thomas

On Sun, Feb 9, 2020 at 2:03 AM Davide Momi momi.davide89@gmail.com wrote:

...

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Dear expert,

I am trying to coregister the Buckner cerebellar parcellation ( http://www.freesurfer.net/fswiki/CerebellumParcellation_Buckner2011) in all my sample. However the results that I got using mri_vol2vol are not so good (see attached). Indeed in most cases the parcellation is bigger than the anatomical cerebellum of my subjects. Do you have any tips?

Thanks _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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