See the usage statement for 'mris_anatomical_stats' below -- just end your command with the surface name (i.e., pial).
Also, you don't need the -t flag (lh.pial is not a thickness file, and thickness is independent of whether stats are computed on the 'white' vs. 'pial' surface).
usage: mris_anatomical_stats [options] <subject name> <hemi> [<surface name>]
cheers, -MH
On Wed, 2011-04-06 at 17:05 +0100, Lena Palaniyappan wrote:
Hi all is it possible to obtain the surface area computations for each of the parcellations in Destrieux annot from pial instead of white surfaces? As the vertex addresses are likely to be different between white and pial surfaces, I suppose the following command is not appropriate – any ideas?mris_anatomical_stats -a aparc.a2009s.annot -t subjid/surf/lh.pial -f subjid/stats/lh.pialparc.stats subjid lh
Lena
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