I'm having some recon-all errors like this:
mritotal -verbose -debug -clobber -modeldir /usr/local/freesurfer/mni/bin/../share/mni_autoreg -protocol icbm transforms/tmp.talairach.3505/src.mnc transforms/talairach.auto.xfm Use of uninitialized value $path in join or string at /usr/local/freesurfer/mni/bin/mritotal line 462. mritotal: Couldn't find configuration file mritotal.cfg anywhere in :/usr/local/freesurfer/mni/bin/../etc/mni_autoreg ERROR: mritotal failed, see transforms/talairach.log Linux ip-10-147-137-177 3.2.39-6.88.amzn1.i686 #1 SMP Sat Mar 2 05:13:38 UTC 2013 i686 i686 i386 GNU/Linux
recon-all -s caso765 exited with ERRORS at Mon Mar 25 19:24:29 UTC 2013
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Is this file /usr/local/freesurfer/mni/bin/../etc/mni_autoreg really missing in the distribution?