Re: [Freesurfer] meshes/surfaces for sub-cortical structures

sure, you could use mri_tesselate or mri_mc for this. We don't typically generate them as the structures don't really have a surface-based organization so (for example) interior points aren't represented on the mesh

On Fri, 30 May 2014, Tanya wrote:

Hi Freesurfers,I'm wondering whether the meshes (list of vertices+faces) corresponding to structures such as the hippocampus and amigdala are available as part of the Freesurfer output? In the /surf folder there are only the meshes of whole brain structures (cortex, pial, WM...). Is there any utility function to generate the meshes for the smaller structures?

Thank you!