Hi Surfers,
as of version 5.2, i'm getting an error using asegstats2table, depending on how i sort the subjects:
andreas@psy058:~$ asegstats2table --subjects $(ls $SUBJECTS_DIR | sort -t _ -k 1 -nk 2) -t segstats.csv --skip -d comma SUBJECTS_DIR : /mnt/raid/freesurfer/subjects Parsing the .stats files Skipping /mnt/raid/freesurfer/subjects/fsaverage/stats/aseg.stats Skipping /mnt/raid/freesurfer/subjects/lh.EC_average/stats/aseg.stats Skipping /mnt/raid/freesurfer/subjects/qdec/stats/aseg.stats Skipping /mnt/raid/freesurfer/subjects/rh.EC_average/stats/aseg.stats Traceback (most recent call last): File "/usr/local/freesurfer/bin/asegstats2table", line 553, in <module> if(nmeasures != nmeasures0 and not options.common_flag and not options.all_flag): NameError: name 'nmeasures0' is not defined
i don't get that error if i either: 1) remove the non-subjects (fsaverage, qdec, etc..) from the list, or: 2) do not sort the list like i do
the subjects list is attached, sorted the way it produces the error
greetings, Andreas