25 Apr
2014
25 Apr
'14
1:49 p.m.
Hi all,
After running 200+ subjects through recon-all using version 5.1, all but 30 came back with complete surfaces. The 30 that failed seem to have the same problem with normalization.
After re-running these 30 subjects with v5.3, we were able to get a good quality brainmask.mgz output, which was not the case when we ran these subjects through v5.1. See attached for comparisons of v5.1 and v5.3 outputs.
Would we need to be adding additional flags to get 5.1 to produce usable results for these subjects? Or might there be some other workaround for this?
Thanks in advance! Maia
