Can you try it without the expert opts? And what sequence is the data?
On Nov 12, 2012, at 3:35 AM, youngmin huh ymin1123@gmail.com wrote:
Hi I'm working with some images, and freesurfer didn't properly detect some of their white matter boundaries. I attached some examples. I ran recon2 with expert options(-b 20 -n 5). As you can see, they have inaccurate white matter boundaries in curved area. I think it's not that highly curved, though. Any comment will be appreciated.
Thanks,
Youngmin Huh
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