Hello Emily and other FreeSurfer useRs,
I'm having trouble getting data out of R and back into FreeSurfer and I was wondering how you did it. The tksurfer doesn't seem to like the .img files that the AnalyzeFMRI package produces (perhaps because it doesn't have a .mat file to go with it). I've tried to convert ascii files into Analyze and MGH files using mris_convert, but tksurfer doesn't like those either.
Any help would be greatly appreciated. Thanks!