External Email - Use Caution
Hello Alba,
As of Mac OS 10.11, El Capitan, DYLD_LIBRARY_PATH and DYLD_FALLBACK_LIBRARY_PATH are ignored as environment variables at run time. Same for all subsequent releases: Sierra = 10.12; High Sierra = 10.13; Mojave = 10.14. You could try setting MATLAB_ROOT to the parent directory of the ./lib and ./bin directories in the Matlab distribution which from your paths looks like it might be /Applications/freesurfer/MCRv84/runtime/maci64 - R.
On Jan 8, 2019, at 12:58, Alba Castells Sánchez <alba.castells.sanchez@gmail.com> wrote: External Email - Use Caution Dear Freesurfer experts, We installed today (8 jan 2019) the last version of Freesurfer dev and the corresponding Runtime Matlab R2014b .. We tried segmentHA_T1.sh with bert to check if it worked. We had a couple of errors related to an Invalid Mex-file. We add the log. We doubt if it may be related to the fact that our computer is not updated to OS El Capitan and we are using OS High Sierra. It is something very simple but we hadn’t realized until now or wether is something to the software. Could you help us?Thousand thanks! #--------------------------------------------#@# Hippocampal Subfields processing (T1) left martes, 8 de enero de 2019, 18:25:06 CET------------------------------------------Setting up environment variables---DYLD_LIBRARY_PATH is .:/Applications/freesurfer/MCRv84//runtime/maci64:/Applications/freesurfer/MCRv84//bin/maci64:/Applications/freesurfer/MCRv84//sys/os/maci64:/Applications/freesurfer/lib/gcc/lib:Invalid MEX-file '/tmp/MCR_583345147/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64': dlopen(/tmp/MCR_583345147/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64, 6): Symbol not found: __ZNKSt5ctypeIcE13_M_widen_initEv Referenced from: /tmp/MCR_583345147/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64 Expected in: /usr/lib/libstdc++.6.0.9.dylib in /tmp/MCR_583345147/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64Error in kvlClear (line 11)Error in segmentSubjectT1_autoEstimateAlveusML (line 115)MATLAB:invalidMEXFileDarwin MacBook-Air-de-Francesca.local 17.7.0 Darwin Kernel Version 17.7.0: Thu Jun 21 22:53:14 PDT 2018; root:xnu-4570.71.2~1/RELEASE_X86_64 x86_64T1 hippocampal subfields exited with ERRORS at martes, 8 de enero de 2019, 18:25:19 CETFor more details, see the log file /Applications/freesurfer/subjects/bert/scripts/hippocampal-subfields-T1.log_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer