25 May
2016
25 May
'16
11:35 a.m.
Hi Freesurfer
I would like to know if it is possible to create surfaces from a scan that is 0.5mm isotropic. I tried to run recon-all on our MNI 2009b atlas which is 0.5mm cubed and it crashed quite quickly afterwards. I wonder if this has to do with the fact that Freesurfer tried to conform it to 1mm isotropic?
When I ran recon-all on the 1mm atlas it created some nice surfaces.
Let me know if you would like the .log as I cannot seem to make much sense of it.
best wishes
Trisanna
-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology