The brain.mgz file won't appear until after the -autorecon2 stage.
Refer to this page for files output at each recon-all stage:
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
On Thu, 2006-08-10 at 15:16 -0700, Jiansong Xu wrote:
Dear Friends:
I'm playing with the tutorial.
I didn't get the brain.tri and brain.mgz files after the first step, see below for the command:
recon-all -subjid bert -autorecon1
Best
Jiansong
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