Hi Bruce,
Thank you for clarifying, this makes more sense, is there a way to check the subcortical segmentation?
Thanks! Jasmin
On Sat, Jul 2, 2016 at 7:28 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Jasmin
the norm.mgz isn't a voxel labeling - it's an intensity volume. We typically check the aseg.mgz display *over* the norm.mgz to see if the labels make sense w.r.t. the intensities.
cheers Bruce On Sat, 2 Jul 2016, Jasmin Alves wrote:
Dear Freesurfer support,
I noticed in previous threads, people have inquired about how to check the quality of the aseg.mgz segmentation using the norm.mgz as a reference. When I did this, there were several mislabeled regions according to the norm.mgz ie. voxels labeled as white matter on the norm.mgz but the hippocampus on the aseg.mgz. Other times the accumbens was labeled as the putamen or the pallidum as the amygdala. This was just in one participant, other participants had several more discrepancies. Are these discrepancies something that requires manual editing? Because I feel like I will have to edit almost every voxel. Your suggestions would be greatly appreciated.
Thanks, Jasmin
-- Jasmin AlvesPredoctoral Student Medical Biology Graduate Program University of Southern California jalves@usc.edu
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.ed...
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at
https://urldefense.proofpoint.com/v2/url?u=http-3A__www.partners.org_complia... . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.