Re: [Freesurfer] remove random factor

-- On Mon, 15 Jun 2009, Dana W. Moore wrote: > Hi all, > > I have run the same image twice with recon-all and gotten different results > for the cortical parcellation, with regions of the cortex differing an > average of 2% in volume and the biggest difference being 11% (left bankssts). > This is on a healthy, elderly brain. I'd like to try running images removing > the random factor that apparently causes these differences. I found > instructions on the internet to create an expert-options file to remove this > random factor. I was wondering where this file should be saved. My problem > is I am actually working remotely with parallel processing nodes, and I don't > have permission to write to the freesurfer home directory. I was wondering, > if I could use the whole path when I enter this command into recon-all, and > then save it anywhere I like. > > Thanks, > Dana > > > Dana W. Moore, Ph.D. > Neuropsychology Fellow > Cornell Neuropsychology Service > Weill Medical College of Cornell University > New York Presbyterian Hospital > Department of Neurology & Neuroscience > 428 East 72nd Street, Suite 500 > New York, NY 10021 > Phone: 212-746-2441 > Fax: 212-746-5584 > Email: dwm2003@med.cornell.edu > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >