For the normal inflated brain, wmparc.mgz has values: 0~85, 251~255, 1000~1035, 2000~2035, 3000~3035, 4000~4035, and 5001, 5002.
I have two unfinished one hemi inflation brains, one wmparc.mgz has values 0 ~176, and the other has 0~156. No other values found.
On 7/7/2016 11:25 AM, Bruce Fischl wrote:
what values does the wmparc have? On Thu, 7 Jul 2016, Kang, XJ wrote:
Thank you for your reply.
The image "wmparc.mgz" does not have the correct values. I am not sure if that because of the interruption of the procedures or not. Also I need to use some other files.
Thank you for your explanations. I will wait for the future corrections on the problem.
On 7/7/2016 11:11 AM, Bruce Fischl wrote: Hi XJ
this is a known problem but we haven't gotten to fixing it yet. Do you need it to complete that step? It is pretty close to the end so it may be that the error doesn't effect you cheers Bruce On Thu, 7 Jul 2016, Kang, XJ wrote: Hi, I am trying to inflate right hemisphere only using the commands: recon-all -autorecon2 -hemi rh -subjid 160526 recon-all -autorecon3 -hemi rh -subjid 160526 The inflation stopped at the step: mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon 160526 SUBJECTS_DIR is /home/sata3/FreeSurfer/SubjectsMRISread(/home/sata3/FreeSurfer/Subjects/160526/surf/lh.white): could not open file
The program "mris_volmask" needs to read "lh.white", which is not generated. Any expert has any suggestions? Maybe I didn't use the commands correctly? Thank you for your help. XJ Kang
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