The UNI scan will likely fail for the talairach. One thing you can try is -samseg-reg, which will compute the tal reg using samseg (which will be much more robust). However, it wont surprise me to see it fail somewhere else along the stream.
On 10/18/2023 8:57 AM, Hensenne, Eva (Stud. FHML) wrote:
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*De :* Hensenne, Eva (Stud. FHML) e.hensenne@student.maastrichtuniversity.nl *Envoyé :* mercredi 18 octobre 2023 14:41 *À :* freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *Objet :* Issues at the "tailarach_avi" transformation step of recon-all Dear Freesurfer Developers,
I am currently running recon-all on a UNI scan. This scan has already been partly preprocessed by a script called "presurfer". This presurfered scan should work with recon-all (and it indeed works for my colleagues). However, I have systematically an error when I try to run recon-all on those files.
The error says: "talairach_avi log file is transforms/talairach_avi.log... Error:mpr2mni305 failed, see transforms/talairach_avi.log Command exited with non-zero status 1".
I attached you the talairach_avi.log and the recon_all.log files.
- Freesurfer version: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460
- Platform: Unbuntu 22.04
- Recon-all.log: attached
Best wishes, Eva Hensenne
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