Hi Elia - Have you searched for the libnetcdf error in the archives? I do believe that a few people were getting that error when 5.3 was first released.
a.y
On Tue, 22 Jul 2014, Elia S. wrote:
Dear Freesurfer Community, Running Tracula preprocessing produces this error:
ERROR: Could not open /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar/T13D/timePoint1/dmri/bvals for reading
I think the error described is the same as here: https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg34169.html
And as suggested here(https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2014-February/035935.... tml) I swapped the dmri_motion from the centos4 updates with the dmri_motion from the centos6 updates, and it works.
Now here's the situation, I need to run tracula on machines where is not possibile to install the centos6 updates, since the message i get is this:
error while loading shared libraries: libnetcdf.so.6: cannot open shared object file: No such file or directory
Do you have any advice for me?
Thanks in advance, Elia.
Freesurfer version: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0
Linux Distribution: Ubuntu 12.04 precise - Ubuntu 12.04.4 LTS
Environment/Version: Linux king-ubuntu 3.2.0-56-generic #86-Ubuntu SMP Wed Oct 23 09:20:45 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
My Current Working Directory: /home/elia