Hello all, I got this error message while running one of my subjects. i checked the /mri directory but nu_noneck.mgz was not created instead nu.mgz was there.
THanks in advance.
Chacko Cherian. Arizona State University.
reading labels out of gcam file... removing structures at least 25 mm from brain... 12620067 nonbrain voxels erased writing output to nu_noneck.mgz... nonbrain removal took 18 minutes and 46 seconds. #-------------------------------------- #@# SkullLTA Wed Aug 9 08:35:57 MST 2006
mri_em_register -skull -t transforms/talairach.lta nu_noneck. mgz /ud/chacko/freesurfer/average/RB_all_withskull_2006-02-15. gca transforms/talairach_with_skull.lta
aligning to atlas containing skull, setting unknown_nbr_spacin g = 5 using previously computed transform transforms/talairach.lta reading 1 input volumes... logging results to talairach_with_skull.log reading '/ud/chacko/freesurfer/average/RB_all_withskull_2006-02-15.gca'... setting gca type = Normal gca type average std = 23.5 using min determinant for regularization= 55.2 0 singular and 6473 ill-conditioned covariance matrices regularized reading 'nu_noneck.mgz'... zcat: /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/maketemp/norm/subj21/mri/nu_noneck.mgz.gz: No such file or directory mghRead(/ud/chacko/freesurfer/subjects/AD_norm_cor25all111/maketemp/norm/subj21/mri/nu_noneck.mgz, -1): read error mri_em_register: could not open input volume nu_noneck.mgz.
Linux ernie 2.6.17.1 #4 PREEMPT Sat Aug 5 09:35:33 MST 2006 i686 pentium4 i386 GNU/Linux
recon-all exited with ERRORS at Wed Aug 9 08:36:35 MST 2006