In a simple word, my question is:
under version 5.3.0, how can I specify funcstem (stem of functional volume)? I don't see any argument for that..
Thanks a lot.
Best, Ji Won
2016-03-04 16:31 GMT-05:00 Ji Won Bang kirstens03@gmail.com:
Dear. Freesurfer experts.
Hi. How are you?
It might be very naive question.
When using version 4.5.0 I used the command: mkbrainmask-sess -s $SUBJECT -funcstem fmc -df sessdirfile -fsd bold_retino
However under the version 5.3.0, mkbrainmask-sess does not have -funcstem.
May I use -maskstem instead of -funcstem?
If so, after that, I tried: inorm-sess -s $SUBJECT -motioncor -funcstem fmc -df sessdirfile -fsd bold_retino
However, it complains that: ERROR: cannot find /home/jbang/Projects/replay/epi/replay06/bold_retino/masks/brain You may need to run preproc-sess or mkbrainmask-sess to create a brain mask
Could you please help?
Thank you very much.
Best, Ji Won