Re: [Freesurfer] Issue with study

have you double checked the orientation of the data in freeview? Eg, is the axial view in freeview truly showing you the axial view of the brain?

On 10/18/2021 11:39 AM, Sarkis, Rani A.,M.D.,M.SC. wrote:

Hello all, I have an issue with a study, and am wondering whether it can be fixed. Freesurfer version:

freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c

I am getting a bad talairach output message and when I try to address it with tkregister2 it seems that the orientations are off with coronal sections being treated as sagittal.

I assume there is an issue with acquisition. The raw data through freeview looks Ok.

all the best,

rani​

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