Re: [Freesurfer] Corrections with brainmask volume

Hi Antonella

those look good to me. Note that you can't tell defects from a single slice. You need to scroll back and forth and look in different orientations. That said, the surfaces look pretty accurate

cheers Bruce On Wed, 13 Jul 2011, Antonella Kis wrote:

Good morning Bruce,   I am  checking my data after recon-all data pre-process.  I am not very sure about some defects (removing dura and pail surface corrections). I attached two tiff files from

tkmedit P1 brainmask.mgz -aux T1.mgz -surfs

Do I have a lot of defects to eliminate on this slides,  are the gray/white boundaries  good or any suggestion regarding manually corrections that should be done on this images it will be very appreciated.   Thank you very much for your help! Antonella