I am still getting the same display error with using an mgh file.
mri_vol2surf --src ./3t2234/label/15yr_lh_A1C_new.mgh --out_type mgh --out ./3t2234/label/15yr_lh_A1C_new2.mgh --regheader 3t2234 --projfrac-max 0 1 .1 --hemi lh
Any suggestions?
Thank you,
Tina Jeon Graduate Student Advanced Imaging Research Center UT Southwestern Medical Center
-----Original Message----- From: Douglas N Greve [mailto:greve@nmr.mgh.harvard.edu] Sent: Thursday, March 08, 2012 2:01 PM To: Tina Jeon Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_vol2surf
Hi Tina, the problem may be with using nifti. Try an mgh file. Also, you'll probably want to use --projfrac-max 0 1 .1 doug
Tina Jeon wrote:
Hi Freesurfers,
I am trying to use projfrac 1 to threshold my newly created cortical label to include the entire cortical ribbon since only a small number of voxels are being included in my manual tracings.
My input code is:
mri_vol2surf --src ./3t2234/label/15yr_lh_A1C_fs.nii.gz --out_type nifti --out ./3t2234/label/15yr_lh_A1C_new.nii.gz --regheader 3t2234 --projfrac 1 --hemi lh
I open the newly created surface with tkmedit and I get a display error (see below). Does anyone have any suggestions on how to absolve the issue?
Thanks all help appreciated,
Tina Jeon
Graduate Student
Advanced Imaging Research Center
UT Southwestern Medical Center
Error accessing display.
Error accessing display.
while executing"SetSlice $gnVolSlice [set gnVolSlice]"
invoked from within".w.fwToolBar.fwNavBar.fwCurSlice.bwInc invoke"
("uplevel" body line 1) invoked from within"uplevel #0 [list $w invoke]"
(procedure "tk::ButtonUp" line 22) invoked from within"tk::ButtonUp .w.fwToolBar.fwNavBar.fwCurSlice.bwInc"
(command bound to event)
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