External Email - Use Caution
Dear Freesurfer's experts
I am trying to run recon-all -all in a subject and it seems there is a problem I do not know how to solve.
rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ recon-all -s sub-001_ses-BSL -i /home/rosalia/Desktop/ARTICO/sub-001_ses-BSL_T1w -T2 /home/rosalia/Desktop/ARTICO/sub-001_ses-BSL_T1w -T2pial -all *ERROR: cannot find /home/rosalia/Desktop/ARTICO/sub-001_ses-BSL_T1w* Linux rosalia-Lenovo-Y520-15IKBN 4.10.0-40-generic #44~16.04.1-Ubuntu SMP Thu Nov 9 15:37:44 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s sub-001_ses-BSL exited with ERRORS at Mon 21 Jun 16:45:13 CEST 2021
For more details, see the log file *(there is no log file created)* To report a problem, see http://secure-web.cisco.com/1fl8R1eHZCuzU6FCHJEl-s4FAaPFJk5v8HULKxGhhH_IJIsA...
rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ cd ARTICO *rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO $ ls* fsaverage sub-001_ses-BSL_T2w.nii sub-003_ses-BSL_T1w.nii sub-001_ses-BSL_T1w.nii sub-003_ses-BSL sub-003_ses-BSL_T2w.nii rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO $
Any idea would be very appreciated.
Kind regards, Rosie