Anne,
It looks like the diagnosis.levels file has 'MApsychosis' as a level but the error message says 'Psychosis', so they would need to match.
Nick
On Tue, 2012-07-03 at 15:51 +0200, Anne Uhlmann wrote:
Hello FreeSurfers,
I have a similar problem as described in an old thread (http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg12357.html) - qdec doesn't read my factor.levels properly. I have checked the files with gedit and can't see any control characters, which might have caused the problem. Any other ideas? I have also attached the diagnosis.levels file
Thank you! Anne
Using /home/virtualuser/freesurfer/lib/tcl/fsgdfPlot.tcl Loading data table /media/MyPassport_/poster/qdec/insula.qdec.table.dat... Number of columns: 3 fsid column: 1 Number of factors: 2 Number of subjects: 18 Reading discrete factor levels from config file /media/MyPassport_/poster/qdec/diagnosis.levels Psychosis Control done. ERROR: Subject MAS082 has an invalid level 'Psychosis' in the diagnosis column INFO: If 'diagnosis' is a discrete factor, then create a file named 'diagnosis.levels' containing the valid factor names one per line.
Cape Universities Brain & Behaviour Initiative Department of Psychiatry & Mental Health University of Cape Town Tel: 021 406 6843
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