Hi Nicole
that's a very strange error. Are you sure that you didn't run out of disk space?
Bruce On Mon, 9 Nov 2015, Nicole Zurcher wrote:
Dear all,
One of my freesurfer recons is failing and I am not sure how to troubleshoot.
This is the error message that I get at the end of the recon-all log file:
mris_calc -o lh.area.mid lh.area add lh.area.pial WARNING: # of slices=-106 in header - assuming 124... read_signa([path]/surf/I.001): could not open file No such file or directory mris_calc: could not establish read access to 'lh.area'. No such file or directory
and this is the command that appears in the recon-all.error CMD mris_calc -o lh.area.mid lh.area add lh.area.pial
See attachment for entire recon-all log file. Any help is greatly appreciated.
Thanks a lot Nicole