Re: [Freesurfer] transform back to original coordinates ?

Hi Bruce,

(aim: transform fs format back to original file format) when I run the commands you suggested: mri_convert -rl orig/001.mgz brainmask.mgz brainmask_transformed.mgz the backtransformed image is in the original coordinate boundaries, but it is not a the same position as the original data (see attached example).

Frederick

--- Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

if your orig volume is in orig/001.mgz, then you can do:

mri_convert -rl orig/001.mgz brainmask.mgz brainmask_transformed.mgz

cheers, Bruce

On Thu, 31 Aug 2006, tulu wrote:

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