The documentation is wrong, it should be --in_ and --out_ (note the underscore, not the dash).
But, read the rest of the documentation carefully and make sure this is going to do what you want it to do. It will NOT change the pixel data. It only changes the description of the geometry of the FOV and should only be used if this description is wrong.
doug
Fornito, Alexander wrote:
Hi, I'm trying to reorient some analyze files using mri_convert. The files are in LAS format and I'd like to get them in LPI format. i run the command below, but get the message: mri_convert: unknown flag "--in-orientation"
mri_convert -it analyze 1000001_lh_bound_gs -ot analyze ./1000001_lh_bound_gs_r.img --in-orientation LAS --out-orientation LPI
Any help is much appreciated! Thanks, Alex
Alex Fornito M.Psych/PhD (clin. neuro.) candidate Melbourne Neuropsychiatry Centre and Department of Psychology The University of Melbourne alexander.fornito@wh.org.au
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