Try this:
mri_vol2vol --mov aseg.mgz --targ rawavg.mgz --o aseg-in-native.mgz --regheader --interp nearest
doug
joel bruss wrote:
Hello-
I'm running FreeSurfer v4.01on SUSE Linux
I'm interested in viewing the sub-cortical parcels, /mri/aseg.mgz, but in the native MRI space. I see that the output of "CA Label" produces a file that is fit to the "CA Normalize" step but I can't figure out the transform that was used. Specifically, for CA Normalize, if I look under /mri/transforms, and sort by time, I have both the talairach.lta and talairach.m3z files, but neither will get me from native to norm space (or vice-versa). Is there a transform file that I'm missing or is this a process of intermediate steps to get from native to norm space? Please help!
Thanks, Joel _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer