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Hello,
I’ve seen a couple mentions on the list-serv about difficulties using Freesurfer on CentOS 8. My issue is likely similar, but I have a few more details. I downloaded freesurfer-linux-centos8_x86_64-7.1.0.tar.gz. When I launch `freeview`, it pops up a white/empty X window for a moment and then quickly disappears.
E.g. $ freeview MESA-LOADER: failed to open swrast (search paths /usr/lib64/dri) libGL error: failed to load driver: swrast Aborted (core dumped)
I vaguely recall that the libGL errors _aren’t_ fatal. I’ve seen them with other X applications. Digging around the abort logs, I found the stack trace (see end of email).
Do you have thoughts on this? I thought it might be a VTK compatibility issue, but that is a guess at best.
Best regards, Ali
###################### The stack trace ########################
[ccpp-2020-11-05-09:15:34-22241]# cat core_backtrace { "signal": 6 , "executable": "/gpfs0/export/apps/opt/freesurfer/7.1.0/bin/freeview" , "only_crash_thread": true , "stacktrace": [ { "crash_thread": true , "frames": [ { "address": 140352624871839 , "build_id": "f796584f6ea7bb2e49cfd09412b9c6ec86eaf0fc" , "build_id_offset": 227743 , "function_name": "raise" , "file_name": "/usr/lib64/libc-2.28.so" } , { "address": 140352624782581 , "build_id": "f796584f6ea7bb2e49cfd09412b9c6ec86eaf0fc" , "build_id_offset": 138485 , "function_name": "abort" , "file_name": "/usr/lib64/libc-2.28.so" } , { "address": 140352824105729 , "build_id": "32cfd4cdfa276fffd5973c44ddb4da4f74f234e4" , "build_id_offset": 1358593 , "function_name": "vtkXOpenGLRenderWindow::CreateAWindow()" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/vtk/libvtkRenderingOpenGL-7.1.so.1" } , { "address": 140352824102018 , "build_id": "32cfd4cdfa276fffd5973c44ddb4da4f74f234e4" , "build_id_offset": 1354882 , "function_name": "vtkXOpenGLRenderWindow::WindowInitialize()" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/vtk/libvtkRenderingOpenGL-7.1.so.1" } , { "address": 140352824096013 , "build_id": "32cfd4cdfa276fffd5973c44ddb4da4f74f234e4" , "build_id_offset": 1348877 , "function_name": "vtkXOpenGLRenderWindow::Start()" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/vtk/libvtkRenderingOpenGL-7.1.so.1" } , { "address": 140352717995302 , "build_id": "c141e58a0e1cf92c2cbd3af5f59b2991aad943c6" , "build_id_offset": 1154342 , "function_name": "vtkRenderWindow::DoStereoRender()" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/vtk/libvtkRenderingCore-7.1.so.1" } , { "address": 140352717996715 , "build_id": "c141e58a0e1cf92c2cbd3af5f59b2991aad943c6" , "build_id_offset": 1155755 , "function_name": "vtkRenderWindow::DoFDRender()" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/vtk/libvtkRenderingCore-7.1.so.1" } , { "address": 140352718000997 , "build_id": "c141e58a0e1cf92c2cbd3af5f59b2991aad943c6" , "build_id_offset": 1160037 , "function_name": "vtkRenderWindow::DoAARender()" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/vtk/libvtkRenderingCore-7.1.so.1" } , { "address": 140352717997021 , "build_id": "c141e58a0e1cf92c2cbd3af5f59b2991aad943c6" , "build_id_offset": 1156061 , "function_name": "vtkRenderWindow::Render()" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/vtk/libvtkRenderingCore-7.1.so.1" } , { "address": 140352824097713 , "build_id": "32cfd4cdfa276fffd5973c44ddb4da4f74f234e4" , "build_id_offset": 1350577 , "function_name": "vtkXOpenGLRenderWindow::Render()" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/vtk/libvtkRenderingOpenGL-7.1.so.1" } , { "address": 5878611 , "build_id": "0de18d9e888c309c18e5e9450078f0fa6f19efa3" , "build_id_offset": 1684307 , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/bin/freeview" } , { "address": 140352637235160 , "build_id": "e09fcae905f4b0eb9e9172fc60003dedd101a2f9" , "build_id_offset": 2695128 , "function_name": "QMetaObject::activate(QObject*, int, int, void**)" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Core.so.5" } , { "address": 140352637290759 , "build_id": "e09fcae905f4b0eb9e9172fc60003dedd101a2f9" , "build_id_offset": 2750727 , "function_name": "QTimer::timeout(QTimer::QPrivateSignal)" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Core.so.5" } , { "address": 140352637291576 , "build_id": "e09fcae905f4b0eb9e9172fc60003dedd101a2f9" , "build_id_offset": 2751544 , "function_name": "QTimer::timerEvent(QTimerEvent*)" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Core.so.5" } , { "address": 140352637241259 , "build_id": "e09fcae905f4b0eb9e9172fc60003dedd101a2f9" , "build_id_offset": 2701227 , "function_name": "QObject::event(QEvent*)" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Core.so.5" } , { "address": 140352873383932 , "build_id": "ea0a04e7776bc525b6915e5ad0c369c06d3bcc24" , "build_id_offset": 1447932 , "function_name": "QApplicationPrivate::notify_helper(QObject*, QEvent*)" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Widgets.so.5" } , { "address": 140352873412800 , "build_id": "ea0a04e7776bc525b6915e5ad0c369c06d3bcc24" , "build_id_offset": 1476800 , "function_name": "QApplication::notify(QObject*, QEvent*)" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Widgets.so.5" } , { "address": 140352637064112 , "build_id": "e09fcae905f4b0eb9e9172fc60003dedd101a2f9" , "build_id_offset": 2524080 , "function_name": "QCoreApplication::notifyInternal2(QObject*, QEvent*)" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Core.so.5" } , { "address": 140352637396158 , "build_id": "e09fcae905f4b0eb9e9172fc60003dedd101a2f9" , "build_id_offset": 2856126 , "function_name": "QTimerInfoList::activateTimers()" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Core.so.5" } , { "address": 140352637398113 , "build_id": "e09fcae905f4b0eb9e9172fc60003dedd101a2f9" , "build_id_offset": 2858081 , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Core.so.5" } , { "address": 140352610068093 , "build_id": "2fa0454e76ccf97da64b0e34042c5e7470ed5328" , "build_id_offset": 317053 , "function_name": "g_main_context_dispatch" , "file_name": "/usr/lib64/libglib-2.0.so.0.5600.4" } , { "address": 140352610069064 , "build_id": "2fa0454e76ccf97da64b0e34042c5e7470ed5328" , "build_id_offset": 318024 , "function_name": "g_main_context_iterate.isra.21" , "file_name": "/usr/lib64/libglib-2.0.so.0.5600.4" } , { "address": 140352610069216 , "build_id": "2fa0454e76ccf97da64b0e34042c5e7470ed5328" , "build_id_offset": 318176 , "function_name": "g_main_context_iteration" , "file_name": "/usr/lib64/libglib-2.0.so.0.5600.4" } , { "address": 140352637398919 , "build_id": "e09fcae905f4b0eb9e9172fc60003dedd101a2f9" , "build_id_offset": 2858887 , "function_name": "QEventDispatcherGlib::processEvents(QFlagsQEventLoop::ProcessEventsFlag)" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Core.so.5" } , { "address": 140352570720945 , "build_id": "ef1892fde946d169edac88b08f41832db8acd8d7" , "build_id_offset": 910001 , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5XcbQpa.so.5" } , { "address": 140352637057578 , "build_id": "e09fcae905f4b0eb9e9172fc60003dedd101a2f9" , "build_id_offset": 2517546 , "function_name": "QEventLoop::exec(QFlagsQEventLoop::ProcessEventsFlag)" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Core.so.5" } , { "address": 140352637092336 , "build_id": "e09fcae905f4b0eb9e9172fc60003dedd101a2f9" , "build_id_offset": 2552304 , "function_name": "QCoreApplication::exec()" , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Core.so.5" } , { "address": 4615883 , "build_id": "0de18d9e888c309c18e5e9450078f0fa6f19efa3" , "build_id_offset": 421579 , "file_name": "/gpfs0/export/apps/opt/freesurfer/7.1.0/bin/freeview" } ] } ] }