25 Jan
2016
25 Jan
'16
12:11 p.m.
Dear FreeSurfer experts,
I find that mri_convert will convert DICOM of structural scan to neurological orientation by default.
For example, mri_convert --in_type dicom --out_type mii <first file in the DICOM directory> <output.nii.gz>
Thus, the NII may need to be swapped in x for use in FSL.
In this the case?
Many thanks, Daniel
-- Daniel Yang, Ph.D. Yale Child Study Center E-mail: daniel.yj.yang@yale.edu