Gonzalo,
Attached is a file called fsgdfPlot.tcl, which was missing from freesurfer v4.0.2. Copy it to your $FREESURFER_HOME/lib/tcl directory.
Nick
On Wed, 2008-03-05 at 12:42 +0100, Gonzalo Sanchez Benavides wrote:
Hi all,
I'm trying to run qdec on a SL 4.5:
[gonzalo@neuro01 ~]$ uname -a Linux neuro01.pic.es 2.6.9-55.0.12.ELsmp #1 SMP Thu Nov 1 08:41:34 CST 2007 i686 i686 i386 GNU/Linux
[gonzalo@neuro01 ~]$ /lib/libc.so.6 GNU C Library stable release version 2.3.4, by Roland McGrath et al. Copyright (C) 2005 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Compiled by GNU CC version 3.4.5 20051201 (Red Hat 3.4.5-2). Compiled on a Linux 2.4.20 system on 2007-06-05. Available extensions: GNU libio by Per Bothner crypt add-on version 2.1 by Michael Glad and others linuxthreads-0.10 by Xavier Leroy The C stubs add-on version 2.1.2. BIND-8.2.3-T5B NIS(YP)/NIS+ NSS modules 0.19 by Thorsten Kukuk Glibc-2.0 compatibility add-on by Cristian Gafton GNU Libidn by Simon Josefsson libthread_db work sponsored by Alpha Processor Inc Thread-local storage support included. For bug reporting instructions, please see: http://www.gnu.org/software/libc/bugs.html.
I get these errors after run the design analyze:
first: ERROR: In /usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWTkUtilities.cxx, line 221 vtkKWQdecApp (0x8790db8): Script: FsgdfPlot_IsWindowShowing 0 Returned Error on line 1: invalid command name "FsgdfPlot_IsWindowShowing" Stack trace: invalid command name "FsgdfPlot_IsWindowShowing" while executing "FsgdfPlot_IsWindowShowing 0"
which I can ignore, and then:
ERROR: In /usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWApplication.cxx, line 1182 vtkKWQdecApp (0x87903e0): TclTk error: invalid command name "vtkTemp351" invalid command name "vtkTemp351" while executing "vtkTemp351 FocusInCallback" (command bound to event)
ERROR: In /usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWApplication.cxx, line 1182 vtkKWQdecApp (0x87903e0): TclTk error: invalid command name "vtkTemp349" invalid command name "vtkTemp349" while executing "vtkTemp349 FinishEditing" (command bound to event)
Looking for the error in archive list, I've seen people experimenting so. Following what you have recommended in http://www.mail- archive.com/freesurfer@nmr.mgh.harvard.edu/msg06821.html, I get a clear ldd:
[gonzalo@neuro01 ~]$ tcsh [gonzalo@neuro01 ~]$ source $FREESURFER_HOME/SetUpFreeSurfer.csh [gonzalo@neuro01 ~]$ source /usr/local/freesurfer/SetUpFreeSurfer.csh -------- freesurfer-Linux-rh9-stable-pub-v4.0.2 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer FSFAST_HOME /usr/local/freesurfer/fsfast FSF_OUTPUT_FORMAT nii SUBJECTS_DIR /usr/local/freesurfer/subjects MNI_DIR /usr/local/freesurfer/mni [gonzalo@neuro01 ~]$ source $FREESURFER_HOME/bin/tcl_setup FS_TCL_HOME =/usr/local/freesurfer/lib/tcltktixblt TCLLIBPATH= /usr/local/freesurfer/lib/tcltktixblt/lib [gonzalo@neuro01 ~]$ source $FREESURFER_HOME/bin/vtk_setup [gonzalo@neuro01 ~]$ source $FREESURFER_HOME/bin/kww_setup
$ ldd $FREESURFER_HOME/bin/qdec.bin libtix8.1.8.4.so => /usr/local/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.4.so (0x0053c000) libtk8.4.so => /usr/local/freesurfer/lib/tcltktixblt/lib/libtk8.4.so (0x00aa3000) libtcl8.4.so => /usr/local/freesurfer/lib/tcltktixblt/lib/libtcl8.4.so (0x007c6000) libGLU.so.1 => /usr/X11R6/lib/libGLU.so.1 (0x00173000) libGL.so.1 => /usr/X11R6/lib/libGL.so.1 (0x00d8a000) libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0x00b8e000) libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0x0063e000) libverdict.so.1.2 => /usr/local/freesurfer/lib/vtk/lib/libverdict.so.1.2 (0x005d8000) libvtkGraphics.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkGraphics.so.5.1 (0x00df8000) libvtkfreetype.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkfreetype.so.5.1 (0x001f1000) libvtkmetaio.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkmetaio.so.5.1 (0x00253000) libvtkpng.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkpng.so.5.1 (0x004c6000) libvtkzlib.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkzlib.so.5.1 (0x00112000) libvtkImaging.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkImaging.so.5.1 (0x06a09000) libvtkFiltering.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkFiltering.so.5.1 (0x05b29000) libvtkCommon.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkCommon.so.5.1 (0x002d9000) libvtksys.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtksys.so.5.1 (0x00123000) libvtkexoIIc.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkexoIIc.so.5.1 (0x004e6000) libvtkNetCDF.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkNetCDF.so.5.1 (0x00d15000) libvtkVolumeRendering.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkVolumeRendering.so.5.1 (0x02dd9000) libvtkRendering.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkRendering.so.5.1 (0x01edd000) libvtkftgl.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkftgl.so.5.1 (0x004a2000) libvtkWidgets.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkWidgets.so.5.1 (0x00653000) libvtkHybrid.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkHybrid.so.5.1 (0x01415000) libvtkIO.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkIO.so.5.1 (0x016bf000) libvtkDICOMParser.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkDICOMParser.so.5.1 (0x008c9000) libvtkVolumeRenderingTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkVolumeRenderingTCL.so.5.1 (0x0057f000) libvtkRenderingTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkRenderingTCL.so.5.1 (0x008e8000) libvtkFilteringTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkFilteringTCL.so.5.1 (0x01b2f000) libvtkWidgetsTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkWidgetsTCL.so.5.1 (0x00c91000) libvtkHybridTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkHybridTCL.so.5.1 (0x0085f000) libvtkGraphicsTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkGraphicsTCL.so.5.1 (0x01c20000) libvtkImagingTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkImagingTCL.so.5.1 (0x009a4000) libvtkIOTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkIOTCL.so.5.1 (0x074fb000) libvtkCommonTCL.so.5.1 => /usr/local/freesurfer/lib/vtk/lib/libvtkCommonTCL.so.5.1 (0x075fb000) libKWWidgets.so => /usr/local/freesurfer/lib/KWWidgets/lib/KWWidgets/libKWWidgets.so (0x021be000) libz.so.1 => /usr/lib/libz.so.1 (0x00c7f000) libcrypt.so.1 => /lib/libcrypt.so.1 (0x06365000) libdl.so.2 => /lib/libdl.so.2 (0x00b88000) libpthread.so.0 => /lib/tls/libpthread.so.0 (0x00d76000) libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0x041e2000) libm.so.6 => /lib/tls/libm.so.6 (0x00b63000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x004ad000) libc.so.6 => /lib/tls/libc.so.6 (0x04bf2000) libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0x00c6f000) libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x0433b000) libXxf86vm.so.1 => /usr/X11R6/lib/libXxf86vm.so.1 (0x001ea000) libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0x00a33000) libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0x00d6b000) libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0x00d51000) libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0x005ae000) libtiff.so.3 => /usr/lib/libtiff.so.3 (0x06480000) libexpat.so.0 => /usr/lib/libexpat.so.0 (0x00607000) /lib/ld-linux.so.2 (0x00a1b000)
But I still get the error after running the design analyze.
So, could you please recomend us what other posibilities do we have in order to correct the error?¿
TIA, Gonzalo
-- Gonzalo Sánchez Benavides _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer