30 Nov
2015
30 Nov
'15
10:13 a.m.
Dear FreeSurfer experts,
I'm trying to convert some retinotopic labels I created on the surface of each individual subject to MNI305 space for FSL.
I run the following commands, but the output is not registered correctly. It seems to be shifted downward.
mni152reg --s LG
mri_label2label --srclabel lh.V1dorsalLG.label --s LG --regmethod surface --trglabel lh.V1dorsalLG_new.label --hemi lh
mri_label2vol --label lh.V1dorsalLG_new.label --reg /usr/local/freesurfer/subjects/LG/mri/mni152.orig.mgz.reg --temp /usr/share/fsl/data/standard/MNI152_T1_2mm.nii.gz --o lh.V1dorsalLG_new_MNI.nii.gz
Thanks for your help, Francesca
--
Francesca Strappini, Ph.D.
Neurobiology Department
Weizmann Institute of Science
234 Herzl Street, Rehovot 7610001 Israel
Tel.: +972 58 444 2584
E-mail: francesca.strappini@weizmann.ac.il