Dear Freesurfer team,
I have two more questions about mri_glmfit-sim.
1. In the summary file I get a list of all the inputs/outputs, but I don't understand what all of them mean. Could you explain the ones I highlighted in bold?
2. Is it possible to a priori set the area threshold, so that I only get clusters larger than a certain size?
# Input rh.CALMlong.thickness-spc.fwhm15/CALMlong_contrast2/sig.mgh # Frame Number 0 # srcsubj fsaverage # hemi rh # surface white # group_avg_surface_area 82167.6 # group_avg_vtxarea_loaded 1 # annot aparc # SUBJECTS_DIR /local_mount/space/avadhuti/1/users/gdesbord/CALM_data// # SearchSpace_mm2 75762.5 # SearchSpace_vtx 148554 # Bonferroni 0 # Minimum Threshold 1.3 # Maximum Threshold infinity # Threshold Sign abs # AdjustThreshWhenOneTail 1 # Area Threshold 0 mm^2 # CSD thresh 1.300000 # CSD nreps 10000 # CSD simtype null-z # CSD contrast NA # CSD confint 90.000000 # Overall max 1.70172 at vertex 163606 # Overall min -2.48953 at vertex 90839 # NClusters 32 # FixMNI = 0
Thank you very much in advance.
Kind regards,
Rose