External Email - Use Caution
Ah, neat! Ok, will give this a go! Thanks a bunch
Trisanna Sprung-Much Research Associate McGill University MD Anderson Cancer Centre --
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "Douglas N. Greve" dgreve@mgh.harvard.edu Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Thursday, March 25, 2021 at 11:36 AM To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] make_average_subject without Talairach transform
If you have the transform in the form of an LTA file, I think all you need to do is put it in the subject/mri/transforms folder, then spec --xfrom your.lta when running make_average_subject On 3/25/2021 11:33 AM, Trisanna Sprung-Much wrote:
External Email - Use Caution
External Email - Use Caution Hi Doug
The scans were registered (6 parameter) to a common chimp template prior to input to recon-all. The surfaces have reconstructed nicely and match the input volumes. I would now like to create an average surface from these surfaces that are “in the space of the average chimp volume”.
Trisanna --
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "Douglas N. Greve" dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Date: Thursday, March 25, 2021 at 11:24 AM To: "freesurfer@nmr.mgh.harvard.edu"mailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] make_average_subject without Talairach transform
If you don't have a transform, how will you align the subjects into a common space? On 3/25/2021 10:19 AM, Trisanna Sprung-Much wrote:
External Email - Use Caution
External Email - Use Caution Hi there
I’d like to know if it is possible to create an average volume and average surface of several subjects without having to incorporate the Talairach transform and no transform at all.
Thank you,
Trisanna Sprung-Much Research Associate McGill University MD Anderson Cancer Centre --
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer