This usually happens when a subject was run all the way through recon-all once, then again but only part of the way (eg, after editing). Check those subjects to see what happened.
On 9/10/2019 5:34 PM, Swanson,Clayton wrote:
External Email - Use Caution
Hello FreeSurfer Developers, I am attempting to run -qcache on a cohort (55) of participants and two of them excited with error. It’s worth noting I am running recon-all -qcache after initial recon-all then correcting for errors and re-processing again.
The error I am receiving is ERROR: number of vertices in /Users/claytonswanson/Desktop/Studies/Current_Studies/MS_Study/MRS_MRI/FreeSurfer/Subject_Dir_T1/Subj_010_T1/surf/lh.thickness does not match surface (154775,154624) ERROR: reading curvature file ERROR: number of vertices in /Users/claytonswanson/Desktop/Studies/Current_Studies/MS_Study/MRS_MRI/FreeSurfer/Subject_Dir_T1/Subj_008_T1/surf/lh.thickness does not match surface (141413,141431) ERROR: reading curvature file
I have not been able to find anything in the mail archive to answer this particular question. I have attached the recon-all.log file if its of use.
Thanks for your help, Clayton ________________________________ Clayton Swanson MS Graduate Research Assistant & PhD Student Sensorimotor Neuroimaging Laboratory Colorado State University Office: (970) 491-6160 Clayton.Swanson@colostate.edumailto:Clayton.Swanson@colostate.edu
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer