Hi Francesco - The bedpostx files are created when you run trac-all -bedp. Then you need to run trac-all -path to reconstruct the paths under dpath/... as the final step. Did you run this?
a.y
On Mon, 19 Aug 2013, Francesco Siciliano wrote:
Thank you!
Is it normal, however, not to have a dpath folder with summary statistics? I have all of the bedpostx output files, however, I seem to be missing the dpath folder as well as a script confirming that -path was completed.
Thanks, Francesco ________________________________________ From: Anastasia Yendiki [ayendiki@nmr.mgh.harvard.edu] Sent: Monday, August 19, 2013 1:56 PM To: Francesco Siciliano Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] [Tracula] error running trac-all –path –c Configuration_file.txt
Hi Francesco - There's a list of bedpostx output files here: http://fsl.fmrib.ox.ac.uk/fsl/fsl4.0/fdt/fdt_bedpostx.html
The best way to determine if bedpostx finished running properly is to check if those files were created in the dmri.bedpostX directory.
a.y
On Mon, 19 Aug 2013, Francesco Siciliano wrote:
Hello, I received an error on several terminals running trac-all –path –c Configuration_file.txt
55 slices processed 56 slices processed 56 slices processed 57 slices processed 57 slices processed 58 slices processed 59 slices processed 60 slices processed 61 slices processed Queuing post processing stage 70 slices processed For some reason the bedpostX process DOES NOT appear to have successfully completed. Please examine your results carefully. /Users/jonathanposner/Desktop/MRI_Software/FSL_installer/fsl/bin/bedpostx: line 262: kill: (15849) - No such process
Is this an indication that the processing did not finish? Could this have anything to do with limited computer memory?
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