External Email - Use Caution
Hi Doug,
Thanks for the reply! We basically want to test an equation like y = age + sex + age*sex. How would you set up the par files for that?
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of freesurfer-request@nmr.mgh.harvard.edu freesurfer-request@nmr.mgh.harvard.edu Sent: Friday, September 23, 2022 6:58 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Freesurfer Digest, Vol 223, Issue 39
Send Freesurfer mailing list submissions to freesurfer@nmr.mgh.harvard.edu
To subscribe or unsubscribe via the World Wide Web, visit https://secure-web.cisco.com/1IzCHemGL_AtVnb1hKsNw_yrWd8f7jBmtqch_lhK5jVhdFn... or, via email, send a message with subject or body 'help' to freesurfer-request@nmr.mgh.harvard.edu
You can reach the person managing the list at freesurfer-owner@nmr.mgh.harvard.edu
When replying, please edit your Subject line so it is more specific than "Re: Contents of Freesurfer digest..."
Today's Topics:
1. Re: Running v7 with recon-all v6 files (fsbuild) 2. Fwd: Error (Ahmad Khan) 3. Re: Error (fsbuild) 4. dcmunpack (O'Dor, Sarah,PHD) 5. Re: Fwd: Error (Douglas N. Greve) 6. Re: dcmunpack (Douglas N. Greve) 7. Re: FSFAST first level covariates (Douglas N. Greve)
----------------------------------------------------------------------
Message: 1 Date: Fri, 23 Sep 2022 08:00:38 +0200 From: fsbuild fsbuild@contbay.com Subject: Re: [Freesurfer] Running v7 with recon-all v6 files To: freesurfer@nmr.mgh.harvard.edu Cc: brouillard.alexandra@gmail.com Message-ID: 9bf58e7024ed99c7c06379a6876dda10@trashmail.com Content-Type: text/plain; charset="utf-8"
External Email - Use Caution
Hello Alexandra Please let us know if you are on an Intel or a newer Mac with an arm processor, e.g., M1, M2 chip. You could send along a screen shot of what "About this Mac" displays. Per the "Important Note" at the bottom of the freesurfer release page, https://secure-web.cisco.com/1h8voqUHNsdhi9ys-CwoL0SIgr1DmXws2WTt1cB7SmS2bkt... , you may not get exactly the same (floating point) results when running v6 on a different/newer version of MacOS.
- R.
On 9/22/22 09:36, Alexandra Brouillard (brouillard.alexandra@gmail.com) wrote:
External Email - Use Caution
Hi I ran recon-all on an external server using the version 6. I recently downloaded the v6 on my Mac v12.6. I was able to set a home directory but get a ?permission denied? error when typing ?$FREESURFER_HOME? (but have the permissions/sudo). I also can?t open Freeview: by double clicking on the app, the GUI crashes, or by typing ?freeview? in the terminal I get a PETSC error. According to some previous forum threads, I?m thinking of downloading the v7 but would like to validate that it?s OK when using recon-all v6 files. Thank you for your support, Alexandra
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1UxrIgfDDA9rvsB1mbWDnICuSG7lAKZ6_Kt-F6dmE_ycb_s... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/10QK0DJSELj6A0Z9B7SeJ4Pw4ytHDHx4VqJvPiItIOo3UK7... <https://secure-web.cisco.com/1ODrGbxxaKclPvtjL5GjXY28DLLx66WIe0MpKi9TvUrgA8y... cwmMraWndDu5-S3ei8hubimZcdWjlXmybq7wVZ40Jt_OHoyghzrMyO1mZg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline%26gt; . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.