Hello,
I am not able to do a regular recon-all of my data on seychelles-- I am doing the same thing I used to do. We have started moving our data to a different location, however, since this is all new data, I don't see how this could be the problem.
I am using freesurfer 4, so I set this var before sourcing the script:
setenv USE_STABLE_4_5_0 source /usr/local/freesurfer/stable4
My subjects_dir is /space/ventzl/36/users/RespMon12C/subjects And my command is what it has always been:
/usr/bin/pbsubmit -q sergeant -l nodes=1:opteron -m chinsel -c 'recon-all
-s RMOCD025 -all -i /cluster/archive/292/siemens/TrioTim-35006-20110504-155020-764000/764000-000004-000001.dcm -mail chinsel@nmr.mgh.harvard.edu -force'
I would appreciate your help!
Thank you, Chindhuri S
---------------------------- Original Message ---------------------------- Subject: PBS JOB 1380351.seychelles.nmr.mgh.harvard.edu From: "adm" adm@nmr.mgh.harvard.edu Date: Thu, June 2, 2011 2:03 pm To: chinsel@nmr.mgh.harvard.edu --------------------------------------------------------------------------
PBS Job Id: 1380351.seychelles.nmr.mgh.harvard.edu Job Name: pbsjob_14 Execution terminated Exit_status=1 resources_used.cput=00:00:00 resources_used.mem=0kb resources_used.vmem=0kb resources_used.walltime=00:00:01
Best,
Chindhuri Selvadurai
Psychiatric Neuroimaging, Manoach Lab Martinos Center for Biomedical Imaging, MGH Phone: (617)726-0307