Hi,
I am not familiar with the mac build and think Krish can probably give more details. You are missing the libgfortran dynamic library. I don't think it is installed on the mac by default. On the mac we use the veclib framework, not sure why the error shows up and what consequences it has.
You can try registering two images with mri_robust_register (which is not used in recon-all). Recon-all might be influenced because mri_robust_template should show the same problems and that is used for motion correction of several inputs and in the longitudinal stream.
Best, Martin
On May 25, 2011, at 12:30 PM, Hyunwoo Lee wrote:
Dear FreeSurfer
Hello, I am currently trying the following freesurfer version: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.1.0/freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0.dmg and I noticed the following. During the first step ( recon-all -i invol1 -i invol2 -subjid your_subject_name ), the console displays the following messages:
Subject Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 Current Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 INFO: SUBJECTS_DIR is ******* Actual FREESURFER_HOME /Applications/freesurfer Darwin mrs.local 10.7.0 Darwin Kernel Version 10.7.0: Sat Jan 29 15:17:16 PST 2011; root:xnu-1504.9.37~1/RELEASE_I386 i386 dyld: Library not loaded: /usr/local/lib/libgfortran.2.dylib Referenced from: /Applications/freesurfer/bin/mri_robust_register Reason: image not found Trace/BPT trap dyld: Library not loaded: /usr/local/lib/libgfortran.2.dylib Referenced from: /Applications/freesurfer/bin/mri_robust_register Reason: image not found Trace/BPT trap
I confirmed that the above message does not appear on the linux version of FS5.1.
So, I was wondering if the above situation will cause any problem down the pipeline? I just kept it running for ~18 hours and it seems to be going fine (i.e. at least no problem until the "mris_ca_label" step)
Thank you very much, and I look forward to hearing from you.
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