Re: [Freesurfer] recon-all error

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Hi, Tim

Thanks for your quick response. I set the PATH environment varible to include Freesurfer binary directory.

I have the new problem when using recon-all , the error is like this: ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050

How can solve this error?

Regards, Jie

-----原始邮件----- 发件人: "Tim Schäfer" ts+ml@rcmd.org 发送时间: 2020-08-23 16:24:28 (星期日) 收件人: "Freesurfer support list" freesurfer@nmr.mgh.harvard.edu 抄送: 主题: Re: [Freesurfer] recon-all error

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What happems if you type 'mri_ca_label' in your shell?

Did you setup your PATH environment variable to include the Freesurfer binary directory?

Tim

...

On August 23, 2020 at 9:34 AM Jie Zhao zjuzhaojie@zju.edu.cn wrote:

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Dear freesurfer developer:

I am using Freesurfer 7.1.1 and encounter an error like this when using recon-all :

zhao@zhao-VirtualBox:~$ export SUBJECTS_DIR=/usr/local/freesurfer/subjects zhao@zhao-VirtualBox:~$ recon-all -s test4 -i sample-002.nii.gz -autorecon1 Subject Stamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 Current Stamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects Actual FREESURFER_HOME /usr/local/freesurfer Linux zhao-VirtualBox 4.15.0-20-generic #21-Ubuntu SMP Tue Apr 24 06:16:15 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux Segmentation fault ERROR: Executable 'mri_ca_label -all-info failed! Is it missing from the distribution?'

What can I do to fix this? Thanks

Best regards

Jie Zhao

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-- Tim Schäfer

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