what are you trying to map to the surface? On Mon, 17 Jun 2013, xiangbo_2010 wrote:
Hi Bruce Thank you for my help, when I use the bbregister, do not know how to choose data for --mov, thanks!
Bo
At 2013-06-17 20:34:39,"Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
Hi Bo,
tksurfer doesn't take a path to a file. Read the help on it - you need to reconstrcut the subject with recon-all then give it the subject id. To project a volumetric map onto the surface use mri_vol2surf, with the registration typically computed by bbregister.
cheers Bruce
On Mon, 17 Jun 2013, xiangbo_2010 wrote:
Hi dougThank you for giving this information, I used the
command: "/tksurfer fsaverage lh inflated -aparc -mni152reg -overlay /pathn
ame/to/s
pm/roi/yourfile.img/", but do not have results for me, and do not know ho
w
to do next? thanks! Bo At 2013-06-06 23:04:30,"Douglas N Greve" greve@nmr.mgh.harvard.edu wrot
e:
>Hi Stephanie, I don't know which recommendation you are referring to. We
>get a lot of emails, and I can't remember each one. Can you repost with >the full thread? >doug > > >On 06/06/2013 10:40 AM, McMains, Stephanie wrote: >> I am wondering why you didn't tell them to go through fsvarege space? >> I thought that was an easy way to go from SPM MNI to freesurfer land. >> >>> /tksurfer fsaverage lh inflated -aparc -mni152reg -overlay /pathname/
to/
spm/roi/yourfile.img/ >> >> >> I am wondering because when I look at the segmentation for fsaverage, >> it seems like it is missing a lot of the gray matter, particularly in >> the big sulci, most likely from the 'smoothing' that comes with >> averaging subjects together. And therefore I wonder if this is the >> best thing to use as an intermediate step. Are you instead suggesting
>> (as it seemed like in this thread), to put the SPM roi into individual
>> subject space and then somehow project it to the surface in free surfe
r?
>> >> Thanks, >> Stephanie >> >> >> +++++++++++++++++++++++++ >> >> Stephanie McMains >> Neuroimaging Staff Scientist >> Center for Brain Science >> Harvard University >> 52 Oxford Street >> Cambridge, MA 02138 >> >> +++++++++++++++++++++++++ >> For answers to frequently asked questions: >> http://cbs.fas.harvard.edu/science/core-facilities/neuroimaging/inform
ati
on-investigators/faq >> >> >> >> >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >-- >Douglas N. Greve, Ph.D. >MGH-NMR Center >greve@nmr.mgh.harvard.edu >Phone Number: 617-724-2358 >Fax: 617-726-7422 > >Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >www.nmr.mgh.harvard.edu/facility/filedrop/index.html >Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > >_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >The information in this e-mail is intended only for the person to whom i
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