Hi everyone! I am new to freesurfer, and I was processing and MRI using "recon-all -autorecon1 -autorecon2 -autorecon3" command and I have a message that the processing was exited with ERRORS. When checking the recon-all. log it appears that these are the error (highlighted in yellow):
#@# BA Labels lh Thu Aug 29 22:14:42 PDT 2013 INFO: fsaverage subject does not exist in SUBJECTS_DIR INFO: Creating symlink to fsaverage subject...
cd /mnt/hgfs/Linux_Share/subjects; ln -s /usr/local/freesurfer/subjects/fsaverage; cd -
ln: failed to create symbolic link `./fsaverage': Operation not supported
mri_label2label --srcsubject fsaverage --srclabel /mnt/hgfs/Linux_Share/subjects/fsaverage/label/lh.BA1.label --trgsubject MGH013_SurferOutput --trglabel ./lh.BA1.label --hemi lh --regmethod surface
No such file or directory mri_label2label: could not open label file /mnt/hgfs/Linux_Share/subjects/fsaverage/label/lh.BA1.label
srclabel = /mnt/hgfs/Linux_Share/subjects/fsaverage/label/lh.BA1.label srcsubject = fsaverage trgsubject = MGH013_SurferOutput trglabel = ./lh.BA1.label regmethod = surface
srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0
SUBJECTS_DIR /mnt/hgfs/Linux_Share/subjects FREESURFER_HOME /usr/local/freesurfer Loading source label. Invalid argument ERROR reading /mnt/hgfs/Linux_Share/subjects/fsaverage/label/lh.BA1.label Linux localhost.localdomain 3.6.11-4.fc16.x86_64 #1 SMP Tue Jan 8 20:57:42 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s MGH013_SurferOutput exited with ERRORS at Thu Aug 29 22:14:43 PDT 2013
If any of you could give us any advice on how to fix this we would really appreciate it! Thank you very much,
Cheers, Katica