Hello,
I am a Freesurfer newbie trying to use the mri_convert command to convert IMA format files to either nii or nifti1 format files. Whenever I run the command I get an error at the very end saying that it failed to write (please see below for the exact output error that was displayed). Any help would be greatly appreciated. Thank you in advance.
Best, Lisa Akiyama
% mri_convert -i $SUBJ_DIR/393-2-4.ima -ot nii -o 393-2-4.nii
mri_convert -i /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima -ot nii
-o 393-2-4.nii
$Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $
reading from /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima...
rows = 256
cols = 256
TR=11.40, TE=4.40, TI=300.00, flip angle=15.00
i_ras = (-0, -1, -0)
j_ras = (-0, 0, -1)
k_ras = (-1, 0, 0)
writing to 393-2-4.nii...
niiWrite(): error opening file 393-2-4.nii
ERROR: failure writing 393-2-4.nii as volume type 24
% mri_convert -i $SUBJ_DIR/393-2-4.ima -ot nifti1 -o 393-2-4
mri_convert -i /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima -ot
nifti1 -o 393-2-4
$Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $
reading from /Volumes/Elements/adult_brain/k_h/slices/393-2-4.ima...
rows = 256
cols = 256
TR=11.40, TE=4.40, TI=300.00, flip angle=15.00
i_ras = (-0, -1, -0)
j_ras = (-0, 0, -1)
k_ras = (-1, 0, 0)
writing to 393-2-4...
nifti1Write(): error opening file 393-2-4.hdr
ERROR: failure writing 393-2-4 as volume type 20