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Hi Freesurfer experts, I have been encountering following errors after running segment_subregions command. I am using freesurfer version 7.3.2, Recon -all -all has been done with the option -cm
segment_subregions thalamus --cross sub-0049
Step 1: preprocessing inputs for thalamus segmentation
Running command: mri_convert /var/folders/dl/1zpqwlt95bnfb3ydwm2mqd1w0000gn/T/tmp8ppe_a7y/tempImage.mgz /var/folders/dl/1zpqwlt95bnfb3ydwm2mqd1w0000gn/T/tmp8ppe_a7y/tempImage.mgz -odt float -rt cubic -vs 0.5 0.5 0.5
Preprocessing took 22 seconds
Step 2: aligning atlas to reference segmentation
Traceback (most recent call last):
File "/Applications/freesurfer/7.3.2/python/scripts/segment_subregions", line 99, in <module>
subregions.run_cross_sectional(args.structure, parameters)
File "/Applications/freesurfer/7.3.2/python/packages/freesurfer/subregions/process.py", line 52, in run_cross_sectional
model.align_atlas_to_seg()
File "/Applications/freesurfer/7.3.2/python/packages/freesurfer/subregions/core.py", line 240, in align_atlas_to_seg
mask = mask.resize(1, interp='nearest')
TypeError: resize() got an unexpected keyword argument 'interp'
(base) abdullah@BadaliMac recon-all %
Kind regards
*Md. Mamun Al-Amin, PhD* *---------------------------* *Postdoctoral Fellow* *Stark Neuroscience Research Institute*
*Indiana University School of Medicine*
*320 W. 15th Street, NB Bldg Rm 103*
*Indianapolis, IN 46202*