Re: [Freesurfer] 5.1.0 volume analysis in native space

If you just run selxavg3-sess, it will do the processing. If you want to run preproc-sess separately, then you can specify -per-session instead of -per-run to get things in native space. doug

On 05/02/2012 02:55 PM, Maya Rosen wrote:

Hi Doug, Ok I see the -native flag in mkanalysis. But there is no -native flag in preproc-sess. How do I go about preprocessing and analyzing the data all in native volume space? Thanks for your help, Maya

On Apr 26, 2012 4:39 PM, "Douglas N Greve" <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

There is (or should be) a -native flag to mkanalysis-sess
doug

On 04/26/2012 11:09 AM, Maya Rosen wrote:

    Hi all,

    In v5.1.0 is there a way to do a volume analysis in native
    space? I know when you do mkanalysis for the surface you can
    use -surface self. But for the volume analysis the only flag I
    see is -mni305. Is there some way to give it a native space
    flag for the volume?

    Thanks!


    Maya


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