Hi Bruce,
Thanks for the info. I am trying to register a resting state functional nifti file. I ran bbregister but it was not well aligned (pictures are attached). Our thought is that the contrast was not strong enough for freesurfer to detect enough common points with the anatomical volume. If we feed another example functional file with better contrast, could we then use that register file to apply to our data? Any thoughts on how we can do this betterwithout manually aligning? Thanks again.
Best, Corey
On Fri, Jul 2, 2010 at 9:30 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Corey,
yes, or you can try bbregister to do it automatically.
cheers Bruce On Fri, 2 Jul 2010, Corey Keller wrote:
Hi Freesurfers,
I know this is probably an easy question, but I am having some trouble with it. I am trying to plot functional data (in nifti format) onto a pial or inflated surface in matlab. I am uring mri_vol2surf but am missing the register file. Do I find this from registering the functional data to the anatomical surface via tkregister? Thanks.
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