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Thanks for the fast reply!
Unfortunately, I have only 3 mprage scans that were collected in another day but no whole-head functional data.
Il giorno lun 26 nov 2018 alle ore 22:07 Greve, Douglas N.,Ph.D. < DGREVE@mgh.harvard.edu> ha scritto:
Do you have any scan that was acquired at the same time that is whole head? Any scan will do. If so, you can run register-sess using the -bbr-int option (or bbregister directly). Eg, if the anatomical was acquired at the same time, then, to use register-sess, create a folder in the session folder called anatomical/001 and put the anatomical in there (eg, anat.nii.gz), then use -bbr-int anatomical anat
On 11/26/2018 02:58 PM, Francesca Strappini wrote:
External Email - Use CautionDear freesurfer experts,
I am using freesurfer to analyze some fMRI data collected on two monkeys. My runs have a partial field of view, since just the posterior part of the brain was scanned. Unfortunately, no full-head EPI was collected. The registration between the processed functional data and the T1 is bad. All the values in the register.dof6.mincost file are above 0.8 and also visually I can see some mismatch. I though to run bbregister, could you suggest me which is the best procedure and which steps of the preprocessing I should re-run after?
Thanks
-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il mailto:francesca.strappini@weizmann.ac.il
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